Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMIGSSFIPLQRVLMYFINPNDS-------MDQFTLEVLRLPRITLAILAGAALGM-SGLMLQNVLKNPIASPDIIGITGGAS-------LSAVVFIAFFSHLTIHLLPLFAVLGGA----VAMMILLVFQTKGQIRPTILIIIGISMQTLFIALVQGLLITTKQLSAAKAYTWLVGSLYGATFKDTIILGMVILAVVPLLFLVIPKMKISILDDPVAIGLGLHVQRMKLIQLITSTILVSMAISLVGNIGFVGLIAPHIAKTIVRGSYAKKLLMSAMIGAISIVIADLIGRTLFLPKEVPAGVFIAAFG-APFFIYLLLTVKKL------ |
4CIJ Chain:A ((3-269)) | ---MSGLKPCVDWLQVTFKTGQDSVKKCVEKLEKVFEILGLNEAEFLPLKNGKYGYKQGVAFQG-------NPVLAVYYDGADDMGIHVEMTGQGCRLFELHTSINWYELFYRLVYEYEVNITRLDVAVDDFKGYFK----------INTLVKKLKDDEVTSRFKKARHIENIVIEG---GETIGHTLYFGAPS-----------SDIQVRFYEKNVQMGMDIDVWNRTEIQLR-------------------DDRAHVVAQIIADDVLP-----------LGEIVAGLLRNYIQFRTRKATDKNKKRWPLARFWLNFLGDVQPLRIAKQM |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4CIJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -241546 for 1714 contacts (-140.9/contact) +
2D Compatibility (PS) -25718 + (NN) -2796 + (LL) 6756
1D Compatibility (HY) -11600 + (ID) 2300
Total energy: -277204.0 ( -161.73 by residue)
QMean score : 0.200
|
|
|