Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLATVGSLIVTSTLVFSSMPFQNAHADTTSMNVPNKQSQNVQNHRPYGGVVPQGMTQAQYTELEKTLPQLSAGSNMQDYNMKLYDATQNIADKYNVIITTNVGVFKPHAVRDMNGHALPLTKDGNFYQTNVDANGVNHGGSEMVQNKTGHMSQQDHMNQNTHMNQQPQIQQGHMQSSNHQMMSPKANMHSSNHQMNQSNKKVLPAAGESMTSSILTASIAALLLVSGLFL-AFRRRSTNK |
2L9U Chain:A ((656-670)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FMMLGGTFLYWRGRR---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2L9U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -3100 for 44 contacts (-70.5/contact) +
2D Compatibility (PS) -1430 + (NN) -1010 + (LL) 11952
1D Compatibility (HY) -1600 + (ID) 250
Total energy: 4562.0 ( 103.68 by residue)
QMean score : -0.099
|
|
|