Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
1U9D Chain:A ((80-109))
----QTQDQIAQVITDQIRQ-LLGADSHLAVVFIP---------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1U9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4604 for 120 contacts (38.4/contact) +
2D Compatibility (PS) -3504 + (NN) -3001 + (LL) 7020
1D Compatibility (HY) -2400 + (ID) 150
Total energy: 2569.0 ( 21.41 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1U9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U9D-query.scw
PDB file :
Tito_Scwrl_1U9D.pdb
: