Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKRQMGIFIYAGIIGGLLSGIVKLGWEVMF-----PPRTPERNATNPPQELLQQLGFSSEFTHQTYTFSNME--LPWVSFIVHFSFSIVIAIIY---------CILVKKYAYLAIGQG-----------AVFGIAIWVLFHLIIMPIMHTVPAVWDQPYQEHLSEFFGHIVWMMTIELVRQHFVYRYKLN------------------
2FDI Chain:A ((5-203))
---LAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRN-----DPLKRLLLEH--GDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAG
General information:
TITO was launched using:
RESULT:
Template:
2FDI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119110 for 1080 contacts (-110.3/contact) +
2D Compatibility (PS) -16051 + (NN) 2400 + (LL) 1132
1D Compatibility (HY) 2000 + (ID) 1100
Total energy: -130729.0 ( -121.05 by residue)
QMean score : 0.067
(partial model without unconserved sides chains):
PDB file :
Tito_2FDI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FDI-query.scw
PDB file :
Tito_Scwrl_2FDI.pdb
: