Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVLITYQIILFFIISLSYYLTLNHYMAVTVGNFTSIFGMFAAILFMYYYLLYKSPEYNQRKRFKHFIHIT----NLIIIAFSTFVLVHLA------LKLFFSI----------
3NSW Chain:A ((1-106))
GSHMEYCPKMLSEIRQEDINDVETVAYVTVTGKT------ARSYNLQYWRLYDVPK-TAPSQWPSFGTLRDDCGNIQLTADTDYVLGCKSGNQDCFVKLHDGLSQKEKDLLKE
General information:
TITO was launched using:
RESULT:
Template:
3NSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100849 for 496 contacts (-203.3/contact) +
2D Compatibility (PS) -8620 + (NN) 5697 + (LL) 568
1D Compatibility (HY) -1200 + (ID) 900
Total energy: -105304.0 ( -212.31 by residue)
QMean score : 0.154
(partial model without unconserved sides chains):
PDB file :
Tito_3NSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NSW-query.scw
PDB file :
Tito_Scwrl_3NSW.pdb
: