Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MSLSKLPLFNHFANIRIQPKLIIKLFLTLIIIVTYT-------FVSGLSVDYKKLLSEAGLSETSLAQIKIFSQISIFFSRVFSVLFTFLIILVISRIMRSDANTKSIFSATLSYILFT--NAISLIILTIQISAGLSLIDYSITSLNIFAKGNRILGTFDLQFFVQ------AYILTVMLIGTSKLSIRASTIWGIIYLILIITFSLISISIQ
4PLO Chain:B ((1-204))
GADESQVP--DQPSSLHVRPQ-------TNCIIMSWTPPLNPNIVVRGYIIGYGVG-SPYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITDVSTPMLPPVGVQAVALTHEAVRVSWADNSVRLYTVRWRTSSAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEA-------------
General information:
TITO was launched using:
RESULT:
Template:
4PLO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123044 for 1183 contacts (-104.0/contact) +
2D Compatibility (PS) -18676 + (NN) 5540 + (LL) 3208
1D Compatibility (HY) 3200 + (ID) 1400
Total energy: -131172.0 ( -110.88 by residue)
QMean score : 0.091
(partial model without unconserved sides chains):
PDB file :
Tito_4PLO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PLO-query.scw
PDB file :
Tito_Scwrl_4PLO.pdb
: