Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------MGCLVYYLLNIDLG-------KMIVAQDLNLQEIFFHNLIYFFSAIFGFLTLGLLNIGMLLINSGMLGFFIAHGIYSNQLKSIL----LVLAPHAIFEILALLIASTFSLGFLSYLYQRMVKKNKIKNKMFHNFVTTIITV---IVLTIIASLLEV--YVTIN
2XVO Chain:A ((9-192))
SQQVEWVFIPVIKDVTYEFKVDNNDNITELYVNGNKLGPASSLEMDFYFDVDVSNNQVRKFNNVFVLFGVIATKDSNKIKMQLTLNPCDFVRGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQNTYTGNTKIEKIQQN--TIIIEKNTGIVFKIPNDMLNIFRYSTT-
General information:
TITO was launched using:
RESULT:
Template:
2XVO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165423 for 897 contacts (-184.4/contact) +
2D Compatibility (PS) -14665 + (NN) 11076 + (LL) 244
1D Compatibility (HY) -5200 + (ID) 1450
Total energy: -175418.0 ( -195.56 by residue)
QMean score : -0.015
(partial model without unconserved sides chains):
PDB file :
Tito_2XVO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XVO-query.scw
PDB file :
Tito_Scwrl_2XVO.pdb
: