Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVVNLIMTKERRTFSSEFKLQMVRLY-KNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
2JRT Chain:A ((26-81))
--------PPLDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAHGEKAL-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JRT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14328 for 325 contacts (-44.1/contact) +
2D Compatibility (PS) -5758 + (NN) -1854 + (LL) 4532
1D Compatibility (HY) 400 + (ID) 350
Total energy: -17358.0 ( -53.41 by residue)
QMean score : 0.743
(partial model without unconserved sides chains):
PDB file :
Tito_2JRT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JRT-query.scw
PDB file :
Tito_Scwrl_2JRT.pdb
: