Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVTDVRLRKIQTDGRMKALVSITLDEAFVIHDLRVIEGNSGLFVAMPSKRTPDGEFRDIAHPINSDMRQEIQDAVMKVYDETDEVVPDKNATSEDSEEA
1LDN Chain:A ((269-305))
----------------------------------------RDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAA-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1LDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4098 for 142 contacts (-28.9/contact) +
2D Compatibility (PS) -3937 + (NN) -1916 + (LL) 4808
1D Compatibility (HY) -1200 + (ID) 250
Total energy: -6593.0 ( -46.43 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_1LDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LDN-query.scw
PDB file :
Tito_Scwrl_1LDN.pdb
: