Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNTFLICDECQAVNIRTLQKKLEKLDPDAEIVIGCQSYCGPGRRKTFTFVNNRPLAALTEEELI-EKVSQQLKKPRDPEEEERLRKRHEERKRRKEEQDRKLKEKLEKRKAQQ
1RY1 Chain:U ((122-177))
--------------------------------------YKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR--------------------
General information:
TITO was launched using:
RESULT:
Template:
1RY1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 17936 for 301 contacts (59.6/contact) +
2D Compatibility (PS) -6330 + (NN) -6274 + (LL) 4984
1D Compatibility (HY) -800 + (ID) 950
Total energy: 8566.0 ( 28.46 by residue)
QMean score : 0.261
(partial model without unconserved sides chains):
PDB file :
Tito_1RY1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RY1-query.scw
PDB file :
Tito_Scwrl_1RY1.pdb
: