Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEIKTLTNN-DFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSP-KCIVFGCY-ENETLIATAALEQIRYVGKEHKSLIKYNFVTNND--KSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
2JLM Chain:A ((10-175))
-FRFVECTEDQHALEILEILNDAIINST-ALYDYKPRSKESMAAWFATKRQNNFPIIGAVNEVGQLLGFASWGSFRAFPAYKYTVEHSVYIHKDYRGLGLSKHLMNELIKRAVESEVHVMVGCIDATNVASIQLHQKLGFIHSGTIQQAGFKFGRWLDAAFYQLTLDT-
General information:
TITO was launched using:
RESULT:
Template:
2JLM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80352 for 1149 contacts (-69.9/contact) +
2D Compatibility (PS) -16843 + (NN) 1051 + (LL) 392
1D Compatibility (HY) -6800 + (ID) 1050
Total energy: -103602.0 ( -90.17 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_2JLM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JLM-query.scw
PDB file :
Tito_Scwrl_2JLM.pdb
: