Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNL-YGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQ-DKPLHDVVIESIDVEE
1ZKC Chain:A ((15-173))
----------VPRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFR----------------------------SCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV--
General information:
TITO was launched using:
RESULT:
Template:
1ZKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62887 for 1230 contacts (-51.1/contact) +
2D Compatibility (PS) -16719 + (NN) -7003 + (LL) 1828
1D Compatibility (HY) -8400 + (ID) 3800
Total energy: -96981.0 ( -78.85 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1ZKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZKC-query.scw
PDB file :
Tito_Scwrl_1ZKC.pdb
: