Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEIVIASNNQGKINDFKVIFPD-YHVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTDRRAQFVCVISMSG--PDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGEKNV
2CAR Chain:A ((8-189))
-KKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKI---DLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKP-----EGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRTSGRIVAPR-GCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYF------
General information:
TITO was launched using:
RESULT:
Template:
2CAR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48122 for 1376 contacts (-35.0/contact) +
2D Compatibility (PS) -19387 + (NN) -8399 + (LL) 724
1D Compatibility (HY) -10800 + (ID) 2650
Total energy: -88634.0 ( -64.41 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_2CAR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CAR-query.scw
PDB file :
Tito_Scwrl_2CAR.pdb
: