Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLQTTYPSNNYPIFVEHGAIDHISTYIDQFDQSFILIDEHVNQYFADKFDDILSYENV--HKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTA-IIAVGGGATGDFAGFVAATLLRGVHFIQVPTTILAH-DSSVGGKVGINSKQGKNLIGAFYRPTAVIYDLDFLKTLPFEQILSGYAEVYKHALLNGESTTQEIEQHFKD--REILQSLNGMDKYIA-----KGIETKLDIVVADEKEQGVRKFLNLGHTFGHAVEYN--HKIAHGHAVMIGIIYQFIVA-NILFNSNHDIQHYINYLTKLGYP-LETITDIDFETIYQYMLSDKKNDKQGVQ-MVLIKHFGDIV-VQHIDQTTLQHACEQLKTYFK |
| 4P53 Chain:A ((70-396)) | --------------------------------RRLIVIDATVRSLYGEQLAAYLAGHDVEFHLCVIDAHESAKVMETVFEVVDAMDAFGVPRRHAPVLAMGGGVLTDIVGLAASLYRRATPYVRIPTTLIGMIDAGIGAKTGVNFREHKNRLGTYHPSSLTLIDPGFLATLDARHLRNGLAEILKVALVKDAELFDLLEGHGASLVEQRMQPG------AALTVLRRAVQGMLEELQPNLWEHQLRRLVDFGHSFSPSVEMAALPELLHGEAVCIDMALSSVLAHHRGLLTEAELGRVLDVMRLLHLPVLHPVCTPD---LMRAALADTVKHRDGWQHMPLPRGIGDAVFVNDVTQREIEAA--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P53.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202642 for 2542 contacts (-79.7/contact) +
2D Compatibility (PS) -31648 + (NN) 355 + (LL) 3016
1D Compatibility (HY) -22800 + (ID) 4000
Total energy: -257719.0 ( -101.38 by residue)
QMean score : 0.423
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