Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE
1NDP Chain:A ((9-155))
-ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKP-NPNLYE
General information:
TITO was launched using:
RESULT:
Template:
1NDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68745 for 1142 contacts (-60.2/contact) +
2D Compatibility (PS) -15716 + (NN) -3866 + (LL) 308
1D Compatibility (HY) -14400 + (ID) 4200
Total energy: -106619.0 ( -93.36 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_1NDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NDP-query.scw
PDB file :
Tito_Scwrl_1NDP.pdb
: