Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKY----LKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQIK
3AKE Chain:A ((1-208))
MRGI-VTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAE-GNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVPPP--FVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERP-----QAYEEVLRDLLRRDERD--QSA----PAPDALVLDTGGMTLDEVVAWVLAHIRR--
General information:
TITO was launched using:
RESULT:
Template:
3AKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103104 for 1666 contacts (-61.9/contact) +
2D Compatibility (PS) -21658 + (NN) -5352 + (LL) 792
1D Compatibility (HY) -12000 + (ID) 3750
Total energy: -145072.0 ( -87.08 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_3AKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AKE-query.scw
PDB file :
Tito_Scwrl_3AKE.pdb
: