Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEA--SVTNDTLN---------NQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAY--GLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
4NBI Chain:A ((1-159))
MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD----
General information:
TITO was launched using:
RESULT:
Template:
4NBI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59086 for 1030 contacts (-57.4/contact) +
2D Compatibility (PS) -16210 + (NN) -7451 + (LL) 216
1D Compatibility (HY) -15200 + (ID) 3050
Total energy: -100781.0 ( -97.85 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_4NBI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NBI-query.scw
PDB file :
Tito_Scwrl_4NBI.pdb
: