Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MIPTFSSIIFLFFKLKYYAIVTILVTMII--MYLSNFATVGLFLTLRKYTTDPAILLPLYILSFSSVSLLATYLVRISLKKF---KKSYLSLNKTYMIIISFVLFATFAFFYIYSTNTSSNGDSLIPYALVFIGLIIFISVVILIMSLFTLKEMKYKRNQEEIETYYEYTLKIEAINNEMRKFRHDYVNILTTLSEYIREDDMIGLRAYFNKNIVPMKDNLQMNAIKLNGIENLKVREIKGLITAKILRAQEMNIPISIEIP---DEVSSINLNMIDLSRSIGIILDNAIEASTEIDDPI---IRVAFIESENSVTFIVMNKCADDIPRIHELFQESFSTKGEGRGLGLSTLKEIADNADNVLLDTIIENGFFIQKVEIINN--- |
| 1YT3 Chain:A ((1-375)) | MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF--------DGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYS---GVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW--LPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL-WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1YT3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -181984 for 2741 contacts (-66.4/contact) +
2D Compatibility (PS) -36283 + (NN) 5970 + (LL) 1444
1D Compatibility (HY) -3600 + (ID) 2550
Total energy: -217003.0 ( -79.17 by residue)
QMean score : 0.205
|
|
|