Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFYEFMQSFLGDDTPLGELVDWINQDSNFPREVKSHSEILSYFRTNPCPESISVPVIKRALSVFNQFTNVQ
2LPB Chain:A ((186-223))
--------------------------IPNIPPNINTWQQVTALAQQK-LLTPQDMEAAKEVYKIH-------
General information:
TITO was launched using:
RESULT:
Template:
2LPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10176 for 192 contacts (-53.0/contact) +
2D Compatibility (PS) -3875 + (NN) -669 + (LL) 1952
1D Compatibility (HY) -800 + (ID) 150
Total energy: -13718.0 ( -71.45 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_2LPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LPB-query.scw
PDB file :
Tito_Scwrl_2LPB.pdb
: