Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MHPRKTLQLPLILKIILNLALI-----GIVIIVLTHTEFQ---LNAGDSNVFLLNWDIRGLTSYIFSFLILVALVSKLILIFITRRQRTS
3C0F Chain:B ((3-87))
IMDEIVNLQKEVSLEEAERYANIASYGDGILLSVHDSTGYRAPEVYCCGEKPWEVYACNRGAN---------LISVNQFEFYFRIEVEG--
General information:
TITO was launched using:
RESULT:
Template:
3C0F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80207 for 440 contacts (-182.3/contact) +
2D Compatibility (PS) -7187 + (NN) 1629 + (LL) 1084
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -86981.0 ( -197.68 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_3C0F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C0F-query.scw
PDB file :
Tito_Scwrl_3C0F.pdb
: