Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------------------------------------------------------------------------MIIL----SASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALF-----SVLEFFDEDIADII---IAKSKIKTKTKCYRA----
4TSD Chain:A ((2-180))
AIFGELSSLGHLFKKTQELEILHEYLKEVMQKGSKANQRVLNLATNTEFQVPLGHGIFSIEQSYCLEHAKESEKGFFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYD----EKRDLIVYEP------VSEASFLRLHAGMLAIFFENDAHALRFYGESFEKYREEPIFKAVVKAPKGLIKLKLAA
General information:
TITO was launched using:
RESULT:
Template:
4TSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46970 for 391 contacts (-120.1/contact) +
2D Compatibility (PS) -7614 + (NN) 6050 + (LL) 1100
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -53084.0 ( -135.76 by residue)
QMean score : 0.181
(partial model without unconserved sides chains):
PDB file :
Tito_4TSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TSD-query.scw
PDB file :
Tito_Scwrl_4TSD.pdb
: