Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---KEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV
4XCH Chain:B ((46-182))
---------LDHTIVKAPYIRLISEEVGPKGDIITNFDIRLIQPNENAMDTAGLHTIEHLLAKLIRQRIDGLIDCSPFGCRTGFHMIMWGKQDSEKIAQVIKSSLEEIAEGITWEDVPGTTIESCGNYKDHSLHSAKEWAKLILSQGISTDAFER
General information:
TITO was launched using:
RESULT:
Template:
4XCH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64873 for 963 contacts (-67.4/contact) +
2D Compatibility (PS) -14282 + (NN) -7151 + (LL) 720
1D Compatibility (HY) -11200 + (ID) 2400
Total energy: -99186.0 ( -103.00 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_4XCH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XCH-query.scw
PDB file :
Tito_Scwrl_4XCH.pdb
: