Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNMNTHTRGIDSGLIHSLQSISLSMFRKGFFGLYQGSISARIGANQFVINKRNAVFDQLNENTLLVLHDK-IDY-RWKEASLDSPIHASVYREFLDAKFIAYARPPYSLAYSLRHNRLLPRD--YLGYRSLGEEIAIFNPKDYDSWQERADTEILRQLQESKKYFVFIKGCGIFAYHRELSKLMEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV
2OPI Chain:A ((3-197))
-----------TDEHIELFLAQAHRYGDAKLMLCSSGNLSWRIG-EEALISGTGSWVPTLAKEKVSICNIASGTPTNGVKPSMESTFHLGVLRERPDVNVVLHFQSEYATAISCMKNKPTNFNVTAEIPCHVGSEIPVIPYYRPGS--PELAKAVVEAMLK--HNSVLLTNHGQVVCGKDFDQVYERATFFEMACRIIVQSG--GDYSVLTPEEIE
General information:
TITO was launched using:
RESULT:
Template:
2OPI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107919 for 1554 contacts (-69.4/contact) +
2D Compatibility (PS) -20608 + (NN) -7160 + (LL) 1552
1D Compatibility (HY) -6800 + (ID) 1450
Total energy: -142385.0 ( -91.62 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_2OPI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OPI-query.scw
PDB file :
Tito_Scwrl_2OPI.pdb
: