Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLAFSLLFTGTFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKEEERQKYKADFKKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEYREEGLDLHDCACEGPFHDHEKKGQKGKKPSHHKH
4M08 Chain:A ((82-185))
----------TQQFLSAFMGTRLGRHLTSGGLLHGVSK-KPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEVWALDQEARTALMQEHTQAALPYLKTVKRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKE
General information:
TITO was launched using:
RESULT:
Template:
4M08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 21654 for 497 contacts (43.6/contact) +
2D Compatibility (PS) -10461 + (NN) 1355 + (LL) 1436
1D Compatibility (HY) -3600 + (ID) 1300
Total energy: 9084.0 ( 18.28 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_4M08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M08-query.scw
PDB file :
Tito_Scwrl_4M08.pdb
: