Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQ-GYLNISHLATSLFVPLIEESILEGELLETCMHYYFTPLEILP-EVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAI---VEYLQQKYALKN---NACTFPKVEFHASGDVIWLERQAKEWLKL
2JFV Chain:A ((28-278))
--IGFIDSGVGGLTVVKEALKQLPNENILFVGDTARCPYGPRPAEQVIQYTWEMTDYLVEQGIKMLVIACNTATAVALEEIKAALSIPVIGVILPGTRAAVKKTQNKQVGI--IGTIGTVKSQAYEKALKEKVPELTVTSLACPKFVSVVESNEYHSSVAKKIVAETLAPLTTKKIDTLILGCTHYPLLRPIIQN-VMGENV-----QLIDSGAETVGEVSMLLDYFNLSNSPQNGRTL--CQFYTTGSAKLFEEIAEDWLGI
General information:
TITO was launched using:
RESULT:
Template:
2JFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -225646 for 2089 contacts (-108.0/contact) +
2D Compatibility (PS) -25679 + (NN) -7267 + (LL) 464
1D Compatibility (HY) -20800 + (ID) 4400
Total energy: -283328.0 ( -135.63 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_2JFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFV-query.scw
PDB file :
Tito_Scwrl_2JFV.pdb
: