Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLKRAKTKAQQIKELLLKHYPNQTTELRHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLALASLEEVKEIIQSVSYSNNKSKHLISMGAKVVKDFKGVIPSTQKELMSLDGVGQKTANVVLSVCFDANYIAVDTHVFRTTHR-LGLSNANTPIKTEEELSDLFKD-----NLSKLHHALILFGRYTCKAKNPLCDACFLKEFCVSKASFKA
1KG2 Chain:A ((28-213))
------------------------------KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYA-RARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSW
General information:
TITO was launched using:
RESULT:
Template:
1KG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86287 for 1319 contacts (-65.4/contact) +
2D Compatibility (PS) -19042 + (NN) -8253 + (LL) 2676
1D Compatibility (HY) -12000 + (ID) 2350
Total energy: -125256.0 ( -94.96 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_1KG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KG2-query.scw
PDB file :
Tito_Scwrl_1KG2.pdb
: