Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVDAFFQIIVLLFSLFLGARLGGLGVGYAGGLGVLILCLFLGLNPGKIPFDVILIIMAVISAISAMQKAGGLDYLVQIAEKILRKHPKQINYLAPSVAYFLTILAGTGHTVFSLIPVIVEVSQSQNIKPKAPLSLAVVSSQVAITASPVSAAVVFMSGILEPLGADYLTLLMVWIPTTFLACMLTAFVMGFTDLKLDSDPNYLERLKAGKISPPMMKKEKETSKSAKLSLWIFIGGVVAIVFYASAISKNIALISPVILGRDYAIVSFMLSVATLIAIFCKINANEIAHSSVFKSGMQACVCVLGVAWLGDTFVSNHIDEIKRYASFLIADYPFLLAVALFLASMLLYSQAATSKALIPSVITALGISANHTEHLYIIVASFASVSALFVLPTYPTLLGAIAMDHTGTTKMGRYVFDHAFLIPGVLVVFLSVALGFVVAPLVL |
3VHL Chain:B ((104-143)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------WVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VHL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2542 for 161 contacts (-15.8/contact) +
2D Compatibility (PS) -4237 + (NN) -207 + (LL) 31908
1D Compatibility (HY) -1200 + (ID) 650
Total energy: 23072.0 ( 143.30 by residue)
QMean score : 0.286
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