Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MAK-TETDNFNKQDK-HKLDYRKINYESKE-IDDGKFIRIGDEVNHIFIEKAKIN-RGYLQN-PKHKRTWWSLWLYKKPSDDALDIKVLDVFDDGKYTYFRYDRDQAFSKFPYTYKVVDGYDNPINS-RVVGNYIIAEDISKKWTLRSGKEYVCVRRDKRKYQKSRDFMRLKRLLEQDEAMKAKRNNMHLIEDTTPQPKNAISVTELLAQIKN-QTPSKECRALNEEEVKTLEEVKNIIKTPK-PLQKDLKKNAKKHTIKTQYCVPIPYIERLKTTDGLE-KHQKGLNNTKKQIQAN-PIEEIKEN-KK |
| 1O9B Chain:A ((7-286)) | YELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKAL----KMRGTGVSMP-NKQLACEYVDELTPAAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGFDIKG-----KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKV-----GMKPLENESLVNDISLLHPGLLVTECVYNPHMT---KLLQQAQQA--------------GCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVMGF |
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General information:
TITO was launched using:
| RESULT:
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Template: 1O9B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 135559 for 2207 contacts (61.4/contact) +
2D Compatibility (PS) -27028 + (NN) 2460 + (LL) 2764
1D Compatibility (HY) 2000 + (ID) 1650
Total energy: 114105.0 ( 51.70 by residue)
QMean score : 0.124
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