Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNHTSSFGSFIAKNGFLNEKEVAQKFNDYIHDRDAQIWLMIMGYDLNKIEYVKANVLSGYKADVNVIIQIKMKQTLDSENLQVKLVSNLKGFNQIDKRKLRSYQEMWNIPPNIYQLFAYFTGELKPTRQDIKYPNKRMLAYEFTNKEQQELLAWLNDNKMLIVSDILKGRGEFSAEWVLVIQKINLNMKWALKNINEVMQHYLDDGIVEISKKGSLKIGRITIQRKGGDNGRESANMLQFKIDPTGLLG-
1YNM Chain:A ((7-247))
--------GSKTAKDGFKNEKDIADRFENWKENSEAQDWLVTMGHNLDEIKSVKAVVLSGYKSDINVQVLVFYKDALDIHNIQVKLVSNKRGFNQIDKHWLAHYQEMWKFDDNLLRILRHFTGELPPYHSNTK-DKRRMFMTEFSQEEQNIVLNWLEKNRVLVLTDILRGRGDFAAEWVLVAQKVSNNARWILRNINEVLQHY-GSGDISLSPRGSINFGRVTIQRKGGDNGRETANMLQFKIDPTELFDI
General information:
TITO was launched using:
RESULT:
Template:
1YNM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83581 for 1866 contacts (-44.8/contact) +
2D Compatibility (PS) -26507 + (NN) -10263 + (LL) 488
1D Compatibility (HY) -22800 + (ID) 6500
Total energy: -149163.0 ( -79.94 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_1YNM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YNM-query.scw
PDB file :
Tito_Scwrl_1YNM.pdb
: