Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MIDQLQIVPKAQVLKNNTMERSLALALQKVSIPRST-----SAHRTLLINHFLEQVILQNIKT-------IAFRGIIKLTPHNENPLLKPYSAFITLNSIIRACAYCPL
4DAM Chain:A ((0-112))
SMNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREG-QSRTSADIDAVAIGHDLARGTA
General information:
TITO was launched using:
RESULT:
Template:
4DAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38891 for 568 contacts (-68.5/contact) +
2D Compatibility (PS) -9718 + (NN) 4709 + (LL) 176
1D Compatibility (HY) 5200 + (ID) 200
Total energy: -38724.0 ( -68.18 by residue)
QMean score : 0.143
(partial model without unconserved sides chains):
PDB file :
Tito_4DAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DAM-query.scw
PDB file :
Tito_Scwrl_4DAM.pdb
: