Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYTELKDKSIKELEELLHAKKAELFELRVKLKNMQLSNPNEIKKARRNIARINTAINAYYSSSVE
3PIP Chain:V ((2-55))
-KPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAELARKGEQ
General information:
TITO was launched using:
RESULT:
Template:
3PIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11692 for 280 contacts (41.8/contact) +
2D Compatibility (PS) -6140 + (NN) -6055 + (LL) 208
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -3545.0 ( -12.66 by residue)
QMean score : 0.722
(partial model without unconserved sides chains):
PDB file :
Tito_3PIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PIP-query.scw
PDB file :
Tito_Scwrl_3PIP.pdb
: