Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFLSGYFLWVKAFHVIAVISWMAALFYLPRLFVYHAENAHKKEFVGVVQIQEKKLYSFIASPAMGFTLITGILMLLIAPEMFKSGGWLHAKLALVVLLLIYHFYCKKCMRELEKDPTGKNARFYRVFNEIPTILMILIVILVVVKPF
4DOY Chain:D ((93-141))
---------WPTAIEVVREIA--AADGSLGHLFGYHLTNAPMIELIG-SQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAI
General information:
TITO was launched using:
RESULT:
Template:
4DOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14621 for 252 contacts (-58.0/contact) +
2D Compatibility (PS) -5073 + (NN) -1458 + (LL) 1376
1D Compatibility (HY) -2000 + (ID) 1100
Total energy: -22876.0 ( -90.78 by residue)
QMean score : 0.090
(partial model without unconserved sides chains):
PDB file :
Tito_4DOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DOY-query.scw
PDB file :
Tito_Scwrl_4DOY.pdb
: