Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDEKLSLETTLSPNRPTIPRNTQIVFSSKELKEPHSNPIPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLGSKNSKNSLLQPLVTPSKVSPTNEVKTPTNDANPPLKHSSQDQENNLFVAPPTEKTLPNNTSSADASENNESNENRDNVEKQAIRDPNIKEFACGKWVYDDENLQAYRPSILKRVDKDKEITTDITPCDYSTAENKSGKIITPYTKISVHKTEPLEDPQTFEAKNNFAILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITRNELNLNEKFMEFVEVY--EGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV |
4OCV Chain:A ((24-378)) | TNEALFDVASHFALEGT--------VDSIEPYGDGHINTTYLVTTDGPRYILQRMN------------------------------TGIFPDTVNLMRNVELVTSTLKAQGKETLDIV------------RTTSGDTWAEI------------DGGAWRVYKFIEHTMSYNLVPNPDVFREAGRAFGDFQNFLSGFDANQLTETIAHFHDTPHRFEDFKKALAADELGRAAGCGPEIEFYLS----------HADQYAVVMDGLRDGSIPLRVTHND-TKLNN----ILMDATTGKARAIIDLDTIMPGSMLFDFGDSIRFGAST------ALEDERD--------------LDKVHFSTELFRAYTEGFVGELRDSITAREAELLPFSG---------NLLTMECGMRFLADYLEGDVYF------ATKYPE--HNLVRSRTQIKLVREMEQRADETRAIVADVMETT------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 183965 for 2942 contacts (62.5/contact) +
2D Compatibility (PS) -36425 + (NN) -5218 + (LL) 8888
1D Compatibility (HY) -6400 + (ID) 2850
Total energy: 141960.0 ( 48.25 by residue)
QMean score : -0.012
|
|
|