Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LAKNTHMNVTVDFTNWGASKYDLRIPVHQPIKALIINLAETLKIDYKDLSKCTIKTTNKAILLSDDDKLTNFQIADGDILEIL
1YQB Chain:A ((18-89))
--SPHLIKVTVKTP---KDKEDFSVTDTCTIQQLKEEISQRFKAH-----PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHL-
General information:
TITO was launched using:
RESULT:
Template:
1YQB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44831 for 483 contacts (-92.8/contact) +
2D Compatibility (PS) -7487 + (NN) -1709 + (LL) 628
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -57299.0 ( -118.63 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_1YQB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YQB-query.scw
PDB file :
Tito_Scwrl_1YQB.pdb
: