Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MKKLKQLTNQLFTSTIFL---VTMLFIIPPTFAIADGSKVSFYEYIYGAPLRWLTVISTTEKKGAFLEMFFSENEGINIQW------LNLIINFLL-----------VFLVITIIFSLAKKFYNKKNA--------
1K3E Chain:A ((1-146))
MSSRSELLLEKFAEKIGIGSISFNENRLCSFAIDEIYYISLSDANDEYMMIYGVCGKFPTDNSNFALEILNANLWFAENGGPYLCYEAGAQSLLLALRFPLDDATPEKLENEIEVVVKSMENLYLVLHNQGITLKIEEISS
General information:
TITO was launched using:
RESULT:
Template:
1K3E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69244 for 616 contacts (-112.4/contact) +
2D Compatibility (PS) -11503 + (NN) -5326 + (LL) 0
1D Compatibility (HY) -4400 + (ID) 1100
Total energy: -91573.0 ( -148.66 by residue)
QMean score : 0.144
(partial model without unconserved sides chains):
PDB file :
Tito_1K3E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K3E-query.scw
PDB file :
Tito_Scwrl_1K3E.pdb
: