Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----MTSEFFSTLLLIIGLLIGFFLAILLILAGIRRFFCSAEEPLKRIRRYQVWHNRYQFNEEVTSFFTVIG-ATLLVSLITVQITAIPFQYTVLIFWSS-WLFHLLSFWKKIRVPKKMKNEMIQLAGFLLITALYFVGYFAMKSLHFSIIHVA-DFPGVIQFGIRTYLTICSLFVASGALIVWQRIYVKLLK----------------------------------------------------------------------------------------------------------------
4R1D Chain:B ((1-301))MDKTGWITHCFGRFLIDLPPDAVINAGYYLWGDRIEYLDDKPTELAARVDRLEQEWRTQRHKSKGNMFLRKIDFGNESVGLLSWSSEVASKTYLLDTYVTSKPTWHVYRWKGKVSVDREQHAVEISRALARNLRSRAPKEIPSEPGFCIDHAYIAGDSFQVERFGVGVTFP-----EHPGARFEFRSSTGAELNSLLERVDGFVQNMLSTFAGMETLRKGKHPVGSLPGEEYLVAGSDKGQRGYTFMWEVQGKEESLTEPNLTAGLAVLERSNENGKPPPPAFKSDKEALELWDTIVDSIRVRPTS


General information:
TITO was launched using:
RESULT:

Template: 4R1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185562 for 1251 contacts (-148.3/contact) +
2D Compatibility (PS) -19474 + (NN) 1314 + (LL) 540
1D Compatibility (HY) 1600 + (ID) 1300
Total energy: -202882.0 ( -162.18 by residue)
QMean score : 0.134

(partial model without unconserved sides chains):
PDB file : Tito_4R1D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4R1D-query.scw
PDB file : Tito_Scwrl_4R1D.pdb: