Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKPRIYTMSFASVYPLYIQKAEKKDRTKEEVDEIIFWLTGYDQDSLQQAIDQAIDFETFFAEAPKMNPNASLITGVICGYRVEEIEDKLMQQIRYLDKLVDELAKGKKMEKILRK
2VW8 Chain:A ((240-265))
-----------------------------------------------------------------------------------------YTECLRLCRRLLWRQSMGESLDELSE-
General information:
TITO was launched using:
RESULT:
Template:
2VW8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3057 for 109 contacts (-28.0/contact) +
2D Compatibility (PS) -2797 + (NN) -974 + (LL) 7064
1D Compatibility (HY) -2000 + (ID) 150
Total energy: -1914.0 ( -17.56 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_2VW8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VW8-query.scw
PDB file :
Tito_Scwrl_2VW8.pdb
: