Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKSLSFMRVLEAVRTMLQEKGGLDISIVMRDQVEMPTTMIEMIDQEEEESQTAWKEKYRFAIHHYTNETDLAGVEKIDTLIQTGFTLPEGYKLIAVRHYGKQNLVK-ENTLIHAKTSFEVSICRELKVKI
3UM3 Chain:A ((72-158))
---------------------------------------INSLDESTQESKLRYIQNFKWT-DTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLK---
General information:
TITO was launched using:
RESULT:
Template:
3UM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5482 for 478 contacts (-11.5/contact) +
2D Compatibility (PS) -8296 + (NN) 1194 + (LL) 4468
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -13116.0 ( -27.44 by residue)
QMean score : 0.003
(partial model without unconserved sides chains):
PDB file :
Tito_3UM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UM3-query.scw
PDB file :
Tito_Scwrl_3UM3.pdb
: