Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGKPVIHEFIVVEGRDDTTAINRSV--IADTIETNGS-------ALSQETIEKIRHA---QELRGVIIFTDPDFPGEKIRKQIDSAVPGCKHAFINR-QDALPKAGRGLGVEHASSANIREALENFHTSGAPTEKQFISKDILVHLGLLGGVGAKERREKIGNILKIGYTNGKQLQTRLESFAISEEQLVAACQKIMQEEENE
3VDP Chain:A ((94-210))
-------STICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPF-GVKVTRIAHGIPV--GG-DLEYTDVVTLSKALEGRR----------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26227 for 633 contacts (-41.4/contact) +
2D Compatibility (PS) -11392 + (NN) -1648 + (LL) 6108
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -39009.0 ( -61.63 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_3VDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VDP-query.scw
PDB file :
Tito_Scwrl_3VDP.pdb
: