Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceLYKNYLQRTLVLLLCFILYFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQ----TQTMSLYQQLEAGIRYIDIRAK---DN-LNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDE----QNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSE-NHTKKPLVIN------SRKFGMQFGA-PNQVIQDDYNGPSVKTKFKEIVQTAYQA---SKADNKLFLNHISATS---LTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN
1GYM Chain:A ((6-275))------------------------------ELENWSK----------WMQPIPDSIPLARISIPGTHDSG------TFKLQNPIKQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAEDSFSSTFE------KKYFVDPIFLKTEGNI-KLGDARGKIVLLKRYSGSNEPGGYNNFYWPDNETFTTTVNQNANVTVQDKYK-VSYDEKVKSIKDTMDETMNNSEDLNHLYINFTSLSSGGTAWNSPYYYASYINPEIANYIKQKNPARV---GWVIQDY----------------


General information:
TITO was launched using:
RESULT:

Template: 1GYM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95028 for 1898 contacts (-50.1/contact) +
2D Compatibility (PS) -26030 + (NN) -5226 + (LL) 4292
1D Compatibility (HY) -17600 + (ID) 4600
Total energy: -144192.0 ( -75.97 by residue)
QMean score : 0.529

(partial model without unconserved sides chains):
PDB file : Tito_1GYM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1GYM-query.scw
PDB file : Tito_Scwrl_1GYM.pdb: