Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LYKNYLQRTLVLLLCFILYFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQ----TQTMSLYQQLEAGIRYIDIRAK---DN-LNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDE----QNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSE-NHTKKPLVIN------SRKFGMQFGA-PNQVIQDDYNGPSVKTKFKEIVQTAYQA---SKADNKLFLNHISATS---LTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN |
1GYM Chain:A ((6-275)) | ------------------------------ELENWSK----------WMQPIPDSIPLARISIPGTHDSG------TFKLQNPIKQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAEDSFSSTFE------KKYFVDPIFLKTEGNI-KLGDARGKIVLLKRYSGSNEPGGYNNFYWPDNETFTTTVNQNANVTVQDKYK-VSYDEKVKSIKDTMDETMNNSEDLNHLYINFTSLSSGGTAWNSPYYYASYINPEIANYIKQKNPARV---GWVIQDY---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GYM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95028 for 1898 contacts (-50.1/contact) +
2D Compatibility (PS) -26030 + (NN) -5226 + (LL) 4292
1D Compatibility (HY) -17600 + (ID) 4600
Total energy: -144192.0 ( -75.97 by residue)
QMean score : 0.529
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