Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKK-SKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVKTQ-EFNRIRVGVSRPL-KGEVINYVLGDFPKAEQPDIIAAIQKSADAIEDFAQTPFIEVMNKYNQK
3VJR Chain:A ((6-192))
IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLH--
General information:
TITO was launched using:
RESULT:
Template:
3VJR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121978 for 1529 contacts (-79.8/contact) +
2D Compatibility (PS) -19572 + (NN) -3501 + (LL) 184
1D Compatibility (HY) -11200 + (ID) 3500
Total energy: -159567.0 ( -104.36 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3VJR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VJR-query.scw
PDB file :
Tito_Scwrl_3VJR.pdb
: