Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFFLDTASVSEIKRISELGLVDGVTTNPTIIAKEGRPFEEVIKEICSIVDGPVSAEV---IGLEADKMVEEA-RILAKWAPN------VVVKIPMTEEGLKAVHTLTAEGIKTNVTLIFTVSQGLMAAKAGATYISPFLGRLDD--------------IGTDGMILIKNLKKVLDNYGLKAEIISASIRHIGHLEEAAEAGAHIATIPGSLFPKLWSHPLTDKGIEGFLKDWEAFSQKEGN
3TKF Chain:A ((111-290))
--------------------------------------------KILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIMIAATWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQV--IALAGCDALTISPVLLEEL--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TKF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101749 for 1140 contacts (-89.3/contact) +
2D Compatibility (PS) -15858 + (NN) -1822 + (LL) 4540
1D Compatibility (HY) -12800 + (ID) 2650
Total energy: -130339.0 ( -114.33 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_3TKF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TKF-query.scw
PDB file :
Tito_Scwrl_3TKF.pdb
: