Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VKKLVAWFNGLSKMWKVVVIIGAVFVVIIALTTGEDEGEQTKTKKDSNKVVKTASRPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQMIGTMKRYQQEILSIDAIKRSSEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFKKVRTNKLQTALNNLKVGYELLDSQK |
2FCW Chain:A ((15-39)) | ----------------------------------------------------LAQSANLTDKELEAFREELKHFEAK-------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2FCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1256 for 104 contacts (-12.1/contact) +
2D Compatibility (PS) -2766 + (NN) -2375 + (LL) 14516
1D Compatibility (HY) -1600 + (ID) 400
Total energy: 6119.0 ( 58.84 by residue)
QMean score : 0.776
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