Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIVLIASLIFIAQTCLGFFQVKYYQHHMNKVANKYAGKIGYHLYSEMERLKFRTSAV----AILVVNENHIVHECQILTGKTVFAQFKTFTNYHHKELSE------------ILTELSSKNKNTI-QE-----------------KAIIKTVNSCMKA-L-------
2F1L Chain:A ((19-187))
-DLVVIGKIVSVYGI-RGEVKVYSFTDPLDNLLDY--RRWTLRRDGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTFTGYEICIPRSELPSYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVDWDADF
General information:
TITO was launched using:
RESULT:
Template:
2F1L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61233 for 800 contacts (-76.5/contact) +
2D Compatibility (PS) -12214 + (NN) 9132 + (LL) 500
1D Compatibility (HY) -5200 + (ID) 600
Total energy: -69615.0 ( -87.02 by residue)
QMean score : 0.229
(partial model without unconserved sides chains):
PDB file :
Tito_2F1L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F1L-query.scw
PDB file :
Tito_Scwrl_2F1L.pdb
: