Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRDQKLKFLVVDALFAVIIALLAQV-AIPLGPIPLTGQTFAIGLAATILGARHGTISVLVYIVLGAVGIPVFQGMTAGIGIIFGPTGGFIIGFIFNAFLTGWLLEKTK-FTVPYAIVANILGAIVTLIFGVLWLKVSTGLD---WPTAFLTGMVPFIIPGIIKAVFAALLGIIIRDRLIKAKLLRAS
3RLB Chain:A ((17-187))
----NVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMI----TG-H-AYILSLSQAFLEYLVAPVSLGI-AGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLF-----
General information:
TITO was launched using:
RESULT:
Template:
3RLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152457 for 1348 contacts (-113.1/contact) +
2D Compatibility (PS) -16686 + (NN) -953 + (LL) 1060
1D Compatibility (HY) -12000 + (ID) 1300
Total energy: -182336.0 ( -135.26 by residue)
QMean score : 0.209
(partial model without unconserved sides chains):
PDB file :
Tito_3RLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RLB-query.scw
PDB file :
Tito_Scwrl_3RLB.pdb
: