Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFNWYKKYREEKRDYKQYKKRIAALPEDYKTAMKAIETYLWNFAKGAGMFEILKNVLEMFENAAADNLELKAVVGDDLAEFADNLLSEFPEETWMDKQRQKLRDSIK
3OP4 Chain:A ((43-109))
-----------------------------ESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSD-----------
General information:
TITO was launched using:
RESULT:
Template:
3OP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3925 for 305 contacts (-12.9/contact) +
2D Compatibility (PS) -6893 + (NN) 517 + (LL) 3276
1D Compatibility (HY) -400 + (ID) 850
Total energy: -8275.0 ( -27.13 by residue)
QMean score : 0.144
(partial model without unconserved sides chains):
PDB file :
Tito_3OP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OP4-query.scw
PDB file :
Tito_Scwrl_3OP4.pdb
: