Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -----MFKNLFKKPKMKDEMLEMKQNQYGARAFNMMIIIVAIVILIK--------AVVLEASISELWVELLLLIVGGGYYF--YSVLKNNVPFMPTIS-LKQTIRLVFL------------ISAIFGISVGIRNVFF-----------LYADNMSGTELSYQMMMFFFI--------SLFTAIGSGVIFGALAYCLYQL--SKWQEKNIMKKIEVENAED--- |
2W36 Chain:A ((1-223)) | MDYRQLHRWDLPPEEAIKVQNELRKKIKLTPYEGEPEYVAGVALSFPGKEEGLAVIVVLEYPSFKILEVVSERGEITFPYIPGLLAFREGPLFLKAWEKLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKSRLYGTFKMPEDKRCSWSYLYDGEEIIGCVIRTKEGSAPIFVSPGHLMDVESSKRLIKAFTLPGRRIPEPTRLAHIYTQRLKKG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2W36.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -180583 for 1294 contacts (-139.6/contact) +
2D Compatibility (PS) -18075 + (NN) 1078 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -200780.0 ( -155.16 by residue)
QMean score : 0.113
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