Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLFIKASPLPNEVSRSS-QVAETFMAEYKAK-NPSDTVEELVLYNTEVPLLDLELMTAGRELQAGKAFTDLAPDVQKKLNAYNALTEQFLAADKYVFVFPLWNLGIPPLLKAYIDTFVIAGKSFRYTEHGPEALLKD-KKAILIHGSGGIYSAGPT-SSFTHGEPYLRTILQFIGINVVPSIFVEGIDHNPSKEAEIVAAAKAVAQESATEF
4M0C Chain:A ((5-179))
-NKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQ---ELTREEQKVTERMSEILQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDVEYSHKYLKAMFNFLGI------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4M0C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99721 for 1176 contacts (-84.8/contact) +
2D Compatibility (PS) -18692 + (NN) -5559 + (LL) 3472
1D Compatibility (HY) -16000 + (ID) 3000
Total energy: -139500.0 ( -118.62 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_4M0C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M0C-query.scw
PDB file :
Tito_Scwrl_4M0C.pdb
: