Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDNNQKDLNQVIRQLKEKGIVVEKTKSRKDIWKSVSSKAMPNMTLRLQ
2Y9J Chain:Y ((28-50))
---DQEQANEVIAVLQMHNIEANKID----------------------
General information:
TITO was launched using:
RESULT:
Template:
2Y9J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1608 for 94 contacts (17.1/contact) +
2D Compatibility (PS) -2495 + (NN) -633 + (LL) 1640
1D Compatibility (HY) -400 + (ID) 350
Total energy: -630.0 ( -6.70 by residue)
QMean score : 0.765
(partial model without unconserved sides chains):
PDB file :
Tito_2Y9J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y9J-query.scw
PDB file :
Tito_Scwrl_2Y9J.pdb
: