Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQLLKDKFGRVHDYIRISVTDRCNLRCVYCMPEE----GLTFLPHEKVLSKDEIVSFMELMVKFGIKKVRITGGEPLLRTDIVEIVRGLGAIPEIEDISITTNAMYLAKKAEALKEAGLTRVNISLDSLHADRFKAI-TRGGRLQKVLDGIQKAEEVGLFPIKLNVVLIKGQNDDEITDFLRFTKDKDINIRFIEYMPIGHAGTSWKEKYLPLDTIFEACNEAGYEYEPVDSIRGNGPSENFRIKGAKGTFGVIHPVSAHFCDSCNRLRLTADGYIKACLYWD-EEMNIRPFIQDPVKLMQLVQKAIDNKPENHEMALKLQDEVQSNKPTWRRMSQIGG |
1TV8 Chain:B ((4-296)) | --QIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL-NVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMI-EQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGV------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1TV8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172934 for 2191 contacts (-78.9/contact) +
2D Compatibility (PS) -30950 + (NN) -10798 + (LL) 3400
1D Compatibility (HY) -30000 + (ID) 5800
Total energy: -247082.0 ( -112.77 by residue)
QMean score : 0.505
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